publications

= equal contribution, c corresponding authors, collaborator profiles , see Google Scholar for an up-to-date and complete list

2025

  1. bioRxiv
    Immiscible Proteins Compete for RNA Binding to Order Condensate Layers
    Wilton T. Snead, Mary K. Skillicorn, Krishna Shrinivasc, and Amy S. Gladfelterc
    PDF Code Website

2024

  1. bioRxiv
    Generalized Design of Sequence-Ensemble-Function Relationships for Intrinsically Disordered Proteins
    Ryan Krueger, Michael P Brennerc, and Krishna Shrinivasc
    PDF Supp Code Website
  2. DNA30
    Learning and Inference in a Lattice Model of Multicomponent Condensates
    Cameron Chalk, Salvador Buse, Krishna Shrinivas, Arvind Murugan, and Erik Winfree
    DOI PDF Website

2023

  1. Nat. Comm
    A model for organization and regulation of nuclear condensates by gene activity
    Halima H. Schede=, Pradeep Natarajan=, Arup K. Chakraborty, and Krishna Shrinivasc
    PDF Supp Code Website
  2. Biophys. J
    A model for cis-regulation of transcriptional condensates and gene expression by proximal lncRNAs
    Pradeep Natarajan, Krishna Shrinivas, and Arup K Chakraborty
    PDF Code Website
  3. Nat. Imm
    The phosphatidylinositol-transfer protein Nir3 promotes PI (4, 5) P2 replenishment in response to TCR signaling during T cell development and survival
    Wen Lu, Ynes A Helou, Krishna Shrinivas, Jen Liou, Byron B Au-Yeung, and Arthur Weiss
    PDF Website

2022

  1. bioRxiv
    Multiphase coexistence capacity in complex fluids
    Krishna Shrinivasc, and Michael P Brenner
    PDF Website

2021

  1. PNAS
    Phase separation in fluids with many interacting components
    Krishna Shrinivasc, and Michael P Brenner
    PDF Supp Code Website
  2. Cell
    RNA-Mediated Feedback Control of Transcriptional Condensates
    Jonathan E. Henninger=, Ozgur Oksuz=, Krishna Shrinivas=, Ido Sagi, Gary LeRoy, Ming M. Zheng, and 9 more authors
    PDF Code Website

2020

  1. Science
    Partitioning of cancer therapeutics in nuclear condensates
    Isaac A Klein, Ann Boija, Lena K Afeyan, Susana Wilson Hawken, Mengyang Fan, Alessandra Dall’Agnese, and 5 more authors
    PDF Supp Website

2019

  1. Mol. Cell
    Enhancer features that drive formation of transcriptional condensates
    Krishna Shrinivas=, Benjamin R Sabari=, Eliot L Coffey, Isaac A Klein, Ann Boija, Alicia V Zamudio, and 5 more authors
    DOI PDF Supp Code Website
  2. Nature
    Pol II phosphorylation regulates a switch between transcriptional and splicing condensates
    Yang Eric Guo, John C Manteiga, Jonathan E Henninger, Benjamin R Sabari, Alessandra Dall’Agnese, Nancy M Hannett, and 5 more authors
    PDF Website

2018

  1. PNAS
    Evolution of weak cooperative interactions for biological specificity
    Ang Gao=, Krishna Shrinivas=, Paul Lepeudry, Hiroshi I Suzuki, Phillip A Sharp, and Arup K Chakraborty
    PDF Supp Code Website
  2. Cell
    Transcription factors activate genes through the phase-separation capacity of their activation domains
    Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall’Agnese, Eliot L Coffey, Alicia V Zamudio, and 5 more authors
    PDF Code Website
  3. Science
    Coactivator condensation at super-enhancers links phase separation and gene control
    Benjamin R Sabari, Alessandra Dall’Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, and 5 more authors
    PDF Supp Code Website

2017

  1. Cell
    A phase separation model for transcriptional control
    Denes Hnisz=, Krishna Shrinivas=, Richard A Young, Arup K Chakraborty, and Phillip A Sharp
    PDF Supp Code Website