publications

= equal contribution, c corresponding authors, see Google Scholar for an up-to-date and complete list

2024

  1. bioRxiv
    Generalized Design of Sequence-Ensemble-Function Relationships for Intrinsically Disordered Proteins
    Ryan Krueger , Michael P Brennerc, and Krishna Shrinivasc
    PDF Supp Code website
  2. DNA30
    Learning and Inference in a Lattice Model of Multicomponent Condensates
    Cameron Chalk , Salvador Buse , Krishna Shrinivas, Arvind Murugan, and Erik Winfree
    PDF website

2023

  1. Nat. Comm
    A model for organization and regulation of nuclear condensates by gene activity
    Halima H. Schede= , Pradeep Natarajan= , Arup K. Chakraborty, and Krishna Shrinivasc
    PDF Supp Code website
  2. Biophys. J
    A model for cis-regulation of transcriptional condensates and gene expression by proximal lncRNAs
    Pradeep Natarajan , Krishna Shrinivas, and Arup K Chakraborty
    PDF Code website
  3. Nat. Imm
    The phosphatidylinositol-transfer protein Nir3 promotes PI (4, 5) P2 replenishment in response to TCR signaling during T cell development and survival
    Wen Lu , Ynes A Helou , Krishna Shrinivas, Jen Liou , Byron B Au-Yeung , and Arthur Weiss
    PDF website

2022

  1. bioRxiv
    Multiphase coexistence capacity in complex fluids
    Krishna Shrinivasc, and Michael P Brenner
    PDF website

2021

  1. PNAS
    Phase separation in fluids with many interacting components
    Krishna Shrinivasc, and Michael P Brenner
    PDF Supp Code website
  2. Cell
    RNA-Mediated Feedback Control of Transcriptional Condensates
    Jonathan E. Henninger= , Ozgur Oksuz= , Krishna Shrinivas=, Ido Sagi , Gary LeRoy , Ming M. Zheng , J. Owen Andrews , Alicia V. Zamudio , Charalampos Lazaris , Nancy M. Hannett , Tong Ihn Lee , Phillip A. Sharp, Ibrahim I. Cissé , Arup K. Chakraborty, and Richard A. Young
    PDF Code website

2020

  1. Science
    Partitioning of cancer therapeutics in nuclear condensates
    Isaac A Klein , Ann Boija , Lena K Afeyan , Susana Wilson Hawken , Mengyang Fan , Alessandra Dall’Agnese , Ozgur Oksuz , Jonathan E Henninger , Krishna Shrinivas, Benjamin R Sabari, and  others
    PDF Supp website

2019

  1. Mol. Cell
    Enhancer features that drive formation of transcriptional condensates
    Krishna Shrinivas=, Benjamin R Sabari=, Eliot L Coffey , Isaac A Klein , Ann Boija , Alicia V Zamudio , Jurian Schuijers , Nancy M Hannett , Phillip A. Sharp, Richard A. Young, and Arup K. Chakraborty
    PDF Supp Code website
  2. Nature
    Pol II phosphorylation regulates a switch between transcriptional and splicing condensates
    Yang Eric Guo , John C Manteiga , Jonathan E Henninger , Benjamin R Sabari, Alessandra Dall’Agnese , Nancy M Hannett , Jan-Hendrik Spille , Lena K Afeyan , Alicia V Zamudio , Krishna Shrinivas, and  others
    PDF website

2018

  1. PNAS
    Evolution of weak cooperative interactions for biological specificity
    Ang Gao= , Krishna Shrinivas=, Paul Lepeudry , Hiroshi I Suzuki , Phillip A Sharp, and Arup K Chakraborty
    PDF Supp Code website
  2. Cell
    Transcription factors activate genes through the phase-separation capacity of their activation domains
    Ann Boija , Isaac A Klein , Benjamin R Sabari, Alessandra Dall’Agnese , Eliot L Coffey , Alicia V Zamudio , Charles H Li , Krishna Shrinivas, John C Manteiga , Nancy M Hannett , and  others
    PDF Code website
  3. Science
    Coactivator condensation at super-enhancers links phase separation and gene control
    Benjamin R Sabari, Alessandra Dall’Agnese , Ann Boija , Isaac A Klein , Eliot L Coffey , Krishna Shrinivas, Brian J Abraham , Nancy M Hannett , Alicia V Zamudio , John C Manteiga , and  others
    PDF Supp Code website

2017

  1. Cell
    A phase separation model for transcriptional control
    Denes Hnisz=, Krishna Shrinivas=, Richard A Young, Arup K Chakraborty, and Phillip A Sharp
    PDF Supp Code website